I have been having a little play, this is what I have discovered on my PC.
If you install Flowcode but have not run it, then install your first tool chain, I believe the initial path will be built into the toolchain.
If you change or keep the path, the install path will then be stored in
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HKEY_LOCAL_MACHINE\SOFTWARE\WOW6432Node\MatrixTSL\Flowcode\Common
When you install the next toolchain, it will read the above key to set the default install path.
You can change the path and then that new path will be used for any future toolchains.
Whenever Flowcode is run I believe it looks in the above key for the path to be picked up by
within compiler options.
So if you ever get toolchain not installed, and you are confident that the target selected is for the toolchain you installed (you cancheck with tool chains are installed by looking at the above key within registry editor - regedit) then:
1) Make sure Flowcode is not running
2) Run Regedit, Only delete
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HKEY_CURRENT_USER\Software\MatrixTSL\FlowcodeV8
Nothing else as deleting windows system files will stop pc from working.
3) Run Flowcode, the installed toolchains should now work.